High-level chron plotting

Plot a chronology, either from a chron model (preferred) or from a chron measurement table if there is no model

plotChron(
  L,
  chron.number = NA,
  meas.num = NA,
  depth.var = "depth",
  age.var = "age",
  age.14c.var = "age14C",
  dot.size = 5,
  legend.position = c(0.7, 0.3),
  ...
)

Arguments

L

A LiPD object - an R serialization of a single LiPD file. It's a list, and is typically created by `readLipd()`

chron.number

chron.numData object to use (NA by default, will ask if needed)

meas.num

chron.numData model to use (NA by default, will ask if needed)

depth.var

variableName to use for depth ("depth" by default)

age.var

variableName to use for age ensemble ("age" by default)

age.14c.var

variableName to use for age ensemble ("age14C" by default)

dot.size

what size dot for the chron plot? Only used if not plotting by plotChronEns() (default = 5)

legend.position

where to put the legend on the chron plot?

...

Arguments passed on to plotChronEns

model.num: chron.numData model to use (NA by default, will ask if needed)
probs: quantiles to calculate and plot
n.bins: number bins over which to calculate intervals. Used to calculate x.bin if not provided.
x.bin: vector of bin edges over which to bin.
y.bin: vector of bin edges over which to bin.
color.low: Band color of the outer most band.
color.high: Band color of the inner most band.
alp: Transparency of the band plot
color.line: Line color (following ggplot rules)
line.width: Width of the line
add.to.plot: A ggplot object to add this plot to. Default is ggplot() .
n.ens.plot: Number of ensemble members to plot
color.ens.line: color of the ensemble lines
alp.ens.line: transparency of the lines
dist.color: distribution color (following ggplot rules)
dist.type: "violin" (default), "up" for one-sided distributions pointed up, "down" for one-sided distributions pointed down
dist.thick: thickness of the line around the distribution
dist.alp: alpha of the distribution
truncate.dist: truncate probability density values below this number. NA (default) means no truncation
dist.scale: controls the vertical span of the probability distribution. Approximately the vertical fraction of the plot that the distribution will cover.
add.paleo.age.depth: add a line that shows the paleoData age depth.
paleo.number: paleo.num number for the paleoData age-depth
color.line.paleo: line color of the paleoData age-depth (following ggplot rules)
plot.traces: Add timeseries lines to the plot (default = TRUE)

Value

a ggplot object, or NA if there's chronData to plot

Author

Nick McKay

Arguments

Value

See also

Author